PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009786842.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 654aa    MW: 74615 Da    PI: 5.1483
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009786842.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.81.3e-21129212189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     ++Yn YAke+GF +r+++s ++++++e   + ++C++eg+++ ++ +     ++r+etrtgC a +++++ ++++w+v++++leHnH +
  XP_009786842.1 129 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAIIRLRLVESSRWRVDEVKLEHNHLF 212
                     69****************************************99888.....8999*******************************77 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-19129212IPR004330FAR1 DNA binding domain
PfamPF105511.5E-25332418IPR018289MULE transposase domain
PROSITE profilePS509669.878535571IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-6546573IPR006564Zinc finger, PMZ-type
PfamPF044344.7E-5546569IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MLQMEEGLGT SEQLPEDEGS DNEVDSEEAF DITCNGDQVL NVEADELEAT TGQILEFESH  60
ETEKSCERVL DFESSDPKDN SHQLLEFHSN GLGGGDTTII DDHTGSSPGK FYPPPVVGME  120
FESYEDAYNY YNCYAKELGF AIRVKSSWTK RNSKEKRGAV LCCNCEGFKT MKEANSRRKE  180
TRTGCLAIIR LRLVESSRWR VDEVKLEHNH LFDPERVQNS KSHKKMDAGV KRKLEPAVDV  240
EVQTIKLYRT PAVETLGYGS SDERAFSGQV DGSTHLKLKE GDIQVIYNFF CRVQLTKPNF  300
FYIMDLNDEG YLKNVFWIDP RSRAAYAYFG DVVVVDTTCV SKKYDIPLLA FFGLNHHKQT  360
LLLGCGLLAD ESFETYVWLL RAWLSCMSGR PPQTIITDRC MALQNAISEV FPRAQHRLNL  420
SIILGSIFNT VGQVGESEVF REVLYNTVYN SLKVDEFEVA WEEMVHQFGF RGYGWLQSLY  480
EDRERWAPIY MKDTFFAGIS IDQPGIAQVH ANGPIITYIV TERGAQGDTG DARNFEVTYD  540
KMGVEVRCIC SCFNFKGYLC RHALSVLNYN GIEEIPNHYI LSRWRKDFKR LYAPELGSSN  600
IDVSNPVQRF DHLHKRAMQV ADEGMTSQDH YMVAWQAFKE SLNKVRLAAD KHVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786842.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X2
RefseqXP_016454216.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X2
SwissprotQ9S7931e-161FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBLK4C7Z60.0K4C7Z6_SOLLC; Uncharacterized protein
STRINGSolyc06g068210.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.11e-163FAR1-related sequence 8